1.10.0

[mothur.git] / clearcutcommand.h

diff --git a/clearcutcommand.h b/clearcutcommand.h
index b3ac28e03a293df1acb1f946fcec755294d0ecf5..d6c0a57d9628a124c3bc900d6865f0ed4e7cc606 100644 (file)
--- a/clearcutcommand.h
+++ b/clearcutcommand.h
@@ -11,7 +11,7 @@
  */
 
 #include "command.hpp"
-
+#include "globaldata.hpp"
 
 /* 
   Evans, J., L. Sheneman, and J.A. Foster (2006) Relaxed Neighbor-Joining: 
@@ -31,7 +31,7 @@ public:
        
 private:
        string outputDir, phylipfile, fastafile, matrixout, inputFile, seed, ntrees;
-       bool version, verbose, quiet, norandom, shuffle, neighbor, expblen, expdist, stdout, kimura, jukes, protein, DNA, stdin;
+       bool version, verbose, quiet, norandom, shuffle, neighbor, expblen, expdist, stdoutWanted, kimura, jukes, protein, DNA, stdinWanted;
        bool abort;
 };