fixes while testing

[mothur.git] / clearcutcommand.cpp

diff --git a/clearcutcommand.cpp b/clearcutcommand.cpp
index 025987fd04bc676cadc7a59f14b19eb9862b5620..a2d0aaa5331a402a538d253e4d1f00d7800fa77e 100644 (file)
--- a/clearcutcommand.cpp
+++ b/clearcutcommand.cpp
@@ -31,6 +31,7 @@ vector<string> ClearcutCommand::getValidParameters(){
 //**********************************************************************************************************************
 ClearcutCommand::ClearcutCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["tree"] = tempOutNames;