changing command name classify.shared to classifyrf.shared

[mothur.git] / classifysharedcommand.h

diff --git a/classifysharedcommand.h b/classifysharedcommand.h
index fe0637494db78aa96ecbac56c2f82b08ba2f9c6d..7a6907f47cc2030d9cab822db6c34b95c72e1504 100755 (executable)
--- a/classifysharedcommand.h
+++ b/classifysharedcommand.h
@@ -20,12 +20,11 @@ public:
   
   vector<string> setParameters();
   string getCommandName()                      { return "classify.shared";     }
-   string getCommandCategory()         { return "OTU-Based Approaches";                }
-  
+  string getCommandCategory()          { return "OTU-Based Approaches";                }  
   string getHelpString();      
-    string getOutputPattern(string);
+  string getOutputPattern(string);
   string getCitation() { return "http://www.mothur.org/wiki/Classify.shared\n"; }
-  string getDescription()              { return "description"; }
+  string getDescription()              { return "implements the random forest machine learning algorithm to identify OTUs that can be used to differentiate between various groups of samples"; }
   int execute();
   
   void help() { m->mothurOut(getHelpString()); }
@@ -35,7 +34,7 @@ private:
     string outputDir;
     vector<string> outputNames, Groups;
   
-    string sharedfile, designfile, otupersplit, splitcriteria;
+    string sharedfile, designfile;
     set<string> labels;
     bool allLines;