Merge remote-tracking branch 'origin'

[mothur.git] / classifysharedcommand.h

diff --git a/classifysharedcommand.h b/classifysharedcommand.h
index 93c62867d48069e7374bf955cfe695c1762227be..276b71ccdfbeda299125477eefbc3796a2c9aa7b 100755 (executable)
--- a/classifysharedcommand.h
+++ b/classifysharedcommand.h
@@ -20,9 +20,9 @@ public:
   
   vector<string> setParameters();
   string getCommandName()                      { return "classify.shared";     }
-   string getCommandCategory()         { return "OTU-Based Approaches";                }
-  string getOutputFileNameTag(string, string);
-  string getHelpString();
+  string getCommandCategory()          { return "OTU-Based Approaches";                }  
+  string getHelpString();      
+  string getOutputPattern(string);
   string getCitation() { return "http://www.mothur.org/wiki/Classify.shared\n"; }
   string getDescription()              { return "description"; }
   int execute();
@@ -34,7 +34,7 @@ private:
     string outputDir;
     vector<string> outputNames, Groups;
   
-    string sharedfile, designfile, otupersplit, splitcriteria;
+    string sharedfile, designfile;
     set<string> labels;
     bool allLines;