vector<string> setParameters();
string getCommandName() { return "classify.shared"; }
- string getCommandCategory() { return "OTU-Based Approaches"; }
-
+ string getCommandCategory() { return "OTU-Based Approaches"; }
string getHelpString();
- string getOutputPattern(string);
+ string getOutputPattern(string);
string getCitation() { return "http://www.mothur.org/wiki/Classify.shared\n"; }
string getDescription() { return "description"; }
int execute();
string outputDir;
vector<string> outputNames, Groups;
- string sharedfile, designfile, otupersplit, splitcriteria;
+ string sharedfile, designfile;
set<string> labels;
bool allLines;