finished work on classify.seqs bayesian method and various bug fixes

[mothur.git] / classifyseqscommand.h

diff --git a/classifyseqscommand.h b/classifyseqscommand.h
index a77b7d1d7193b862c88e036553a7616fb3f33dc9..a73aa0c576f1dc6a3437d9c37557aa89cc0b451c 100644 (file)
--- a/classifyseqscommand.h
+++ b/classifyseqscommand.h
@@ -35,13 +35,13 @@ private:
        Classify* classify;
        
        string fastaFileName, templateFileName, distanceFileName, search, method, taxonomyFileName;
-       int processors, kmerSize, numWanted;
+       int processors, kmerSize, numWanted, cutoff;
        float match, misMatch, gapOpen, gapExtend;
        bool abort;
        
-       int driver(linePair*, string);
+       int driver(linePair*, string, string);
        void appendTaxFiles(string, string);
-       void createProcesses(string); 
+       void createProcesses(string, string); 
 };
 
 #endif