changed how we break up the files on parallelized commands to avoid scanning file.

[mothur.git] / classifyseqscommand.h

diff --git a/classifyseqscommand.h b/classifyseqscommand.h
index 03e6826d1276b4efbdf12b5fce0aeb4cdea8fb08..84f5f9f04d6752728c5f3bf72d5688cafd73b723 100644 (file)
--- a/classifyseqscommand.h
+++ b/classifyseqscommand.h
@@ -36,9 +36,10 @@ public:
 private:
        struct linePair {
                unsigned long int start;
-               int numSeqs;
-               linePair(unsigned long int i, int j) : start(i), numSeqs(j) {}
+               unsigned long int end;
+               linePair(unsigned long int i, unsigned long int j) : start(i), end(j) {}
        };
+
        vector<int> processIDS;   //processid
        vector<linePair*> lines;
        vector<string> fastaFileNames;
@@ -56,7 +57,7 @@ private:
        
        int driver(linePair*, string, string, string);
        void appendTaxFiles(string, string);
-       void createProcesses(string, string, string); 
+       int createProcesses(string, string, string); 
        string addUnclassifieds(string, int);
        
        int MPIReadNamesFile(string);