1.23.0

[mothur.git] / classifyseqscommand.h

diff --git a/classifyseqscommand.h b/classifyseqscommand.h
index eef96ffbe5d32f88f9f9552165b299f0247505dc..0e21a203caaa0c4a8166d7ecb08a685cd36f3169 100644 (file)
--- a/classifyseqscommand.h
+++ b/classifyseqscommand.h
@@ -157,8 +157,8 @@ static DWORD WINAPI MyClassThreadFunction(LPVOID lpParam){
                
                //make classify
                Classify* myclassify;
-               if(pDataArray->method == "bayesian"){   myclassify = new Bayesian("saved", "saved", pDataArray->search, pDataArray->kmerSize, pDataArray->cutoff, pDataArray->iters, pDataArray->threadID);             }
-               else if(pDataArray->method == "knn"){   myclassify = new Knn("saved", "saved", pDataArray->search, pDataArray->kmerSize, pDataArray->gapOpen, pDataArray->gapExtend, pDataArray->match, pDataArray->misMatch, pDataArray->numWanted, pDataArray->threadID);                             }
+               if(pDataArray->method == "bayesian"){   myclassify = new Bayesian(pDataArray->taxonomyFileName, pDataArray->templateFileName, pDataArray->search, pDataArray->kmerSize, pDataArray->cutoff, pDataArray->iters, pDataArray->threadID);           }
+               else if(pDataArray->method == "knn"){   myclassify = new Knn(pDataArray->taxonomyFileName, pDataArray->templateFileName, pDataArray->search, pDataArray->kmerSize, pDataArray->gapOpen, pDataArray->gapExtend, pDataArray->match, pDataArray->misMatch, pDataArray->numWanted, pDataArray->threadID);                           }
                else {
                        pDataArray->m->mothurOut(pDataArray->search + " is not a valid method option. I will run the command using bayesian.");
                        pDataArray->m->mothurOutEndLine();