added rarepercent and keepties parameters to the filter.shared command.

[mothur.git] / classifyseqscommand.cpp

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index 114036b2e89ea47a6a3aed1c9e08b514835ccd24..8b6a77b4936b0095741747cb255e143a1cd78e64 100644 (file)
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -258,7 +258,6 @@ ClassifySeqsCommand::ClassifySeqsCommand(string option)  {
 
                        namefile = validParameter.validFile(parameters, "name", false);
                        if (namefile == "not found") { namefile = "";  }
-
                        else { 
                                m->splitAtDash(namefile, namefileNames);
                                
@@ -1044,6 +1043,9 @@ int ClassifySeqsCommand::createProcesses(string taxFileName, string tempTaxFile,
                //Close all thread handles and free memory allocations.
                for(int i=0; i < pDataArray.size(); i++){
                        num += pDataArray[i]->count;
+            if (pDataArray[i]->count != pDataArray[i]->end) {
+                m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end) + " sequences assigned to it, quitting. \n"); m->control_pressed = true; 
+            }
                        CloseHandle(hThreadArray[i]);
                        delete pDataArray[i];
                }