added warning about average neighbor merges around cutoff. fixed little bugs.

[mothur.git] / classifyseqscommand.cpp

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index 52248979080ce4a8b3676fb3fa96baa3e7ddd24a..39dda9ffd5fb29bb872ce4ccb205882d69926c66 100644 (file)
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -81,7 +81,7 @@ ClassifySeqsCommand::ClassifySeqsCommand(string option){
                        
                        
                        namefile = validParameter.validFile(parameters, "name", false);
-                       if (fastaFileName == "not found") { namefile = "";  }
+                       if (namefile == "not found") { namefile = "";  }
                        else { 
                                splitAtDash(namefile, namefileNames);
                                
@@ -297,7 +297,7 @@ int ClassifySeqsCommand::execute(){
 #endif 
                        //make taxonomy tree from new taxonomy file 
                        PhyloTree taxaBrowser;
-                       
+               
                        ifstream in;
                        openInputFile(tempTaxonomyFile, in);