added count file to get.oturep, pre.cluster, screen.seqs, tree.shared. made remove...

[mothur.git] / classifyseqscommand.cpp

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index bab774012f20283e12b43606349b5b519721f0b7..2e55673934a03b4c0ba5984f930499ec86e1e165 100644 (file)
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -619,7 +619,7 @@ int ClassifySeqsCommand::execute(){
                
                        m->mothurOut("Classifying sequences from " + fastaFileNames[s] + " ..." ); m->mothurOutEndLine();
                        
-                       string baseTName = taxonomyFileName;
+                       string baseTName = m->getSimpleName(taxonomyFileName);
                        if (taxonomyFileName == "saved") {baseTName = rdb->getSavedTaxonomy();  }
                        
             //set rippedTaxName to