some bug fixes

[mothur.git] / classifyseqscommand.cpp

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index a20a383b6125e135fc1aefeec47e2bc6b892f1e9..0635fdeb4cd9a72de87d786d6a0aa30056b99a7d 100644 (file)
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -32,7 +32,7 @@ ClassifySeqsCommand::ClassifySeqsCommand(string option)  {
                        OptionParser parser(option);
                        map<string, string> parameters = parser.getParameters(); 
                        
-                       ValidParameters validParameter;
+                       ValidParameters validParameter("classify.seqs");
                        map<string, string>::iterator it;
                        
                        //check to make sure all parameters are valid for command
@@ -414,7 +414,7 @@ int ClassifySeqsCommand::execute(){
 #ifdef USE_MPI 
                                int pid, end, numSeqsPerProcessor; 
                                int tag = 2001;
-                               vector<long> MPIPos;
+                               vector<unsigned long int> MPIPos;
                                
                                MPI_Status status; 
                                MPI_Comm_rank(MPI_COMM_WORLD, &pid); //find out who we are
@@ -841,7 +841,7 @@ int ClassifySeqsCommand::driver(linePair* line, string taxFName, string tempTFNa
 }
 //**********************************************************************************************************************
 #ifdef USE_MPI
-int ClassifySeqsCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& newFile, MPI_File& tempFile, vector<long>& MPIPos){
+int ClassifySeqsCommand::driverMPI(int start, int num, MPI_File& inMPI, MPI_File& newFile, MPI_File& tempFile, vector<unsigned long int>& MPIPos){
        try {
                MPI_Status statusNew; 
                MPI_Status statusTemp;