added mothurgetpid function. fixed bug with align.seqs related to g++ 4.8 change...

[mothur.git] / classifyseqscommand.cpp

diff --git a/classifyseqscommand.cpp b/classifyseqscommand.cpp
index 30bfd9e486c151572940ce461f14a05ed46e5721..d494068522e692386dd0ed7a0025c9fb25b416ed 100644 (file)
--- a/classifyseqscommand.cpp
+++ b/classifyseqscommand.cpp
@@ -980,11 +980,11 @@ int ClassifySeqsCommand::createProcesses(string taxFileName, string tempTaxFile,
                                processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
                                process++;
                        }else if (pid == 0){
-                               num = driver(lines[process], taxFileName + toString(getpid()) + ".temp", tempTaxFile + toString(getpid()) + ".temp", accnos + toString(getpid()) + ".temp", filename);
+                               num = driver(lines[process], taxFileName + m->mothurGetpid(process) + ".temp", tempTaxFile + m->mothurGetpid(process) + ".temp", accnos + m->mothurGetpid(process) + ".temp", filename);
 
                                //pass numSeqs to parent
                                ofstream out;
-                               string tempFile = filename + toString(getpid()) + ".num.temp";
+                               string tempFile = filename + m->mothurGetpid(process) + ".num.temp";
                                m->openOutputFile(tempFile, out);
                                out << num << endl;
                                out.close();