public:
ClassifyOtuCommand(string);
ClassifyOtuCommand();
- ~ClassifyOtuCommand();
- vector<string> getRequiredParameters();
- vector<string> getValidParameters();
- vector<string> getRequiredFiles();
- map<string, vector<string> > getOutputFiles() { return outputTypes; }
- int execute();
- void help();
+ ~ClassifyOtuCommand() {}
+
+ vector<string> setParameters();
+ string getCommandName() { return "classify.otu"; }
+ string getCommandCategory() { return "Phylotype Analysis"; }
+ string getHelpString();
+
+ int execute();
+ void help() { m->mothurOut(getHelpString()); }
private:
vector<string> outputNames;
map<string, string> nameMap;
map<string, string> taxMap;
- map<string, vector<string> > outputTypes;
int readNamesFile();
int readTaxonomyFile();