added summary file to classify.otu

[mothur.git] / classifyotucommand.h

diff --git a/classifyotucommand.h b/classifyotucommand.h
index 60bfb29a900dbabedcb49a23523b4b704e98352e..e81c246201f36b7904d26b702748e1ba653dff66 100644 (file)
--- a/classifyotucommand.h
+++ b/classifyotucommand.h
@@ -32,7 +32,7 @@ private:
 
        ListVector* list;
        InputData* input;
-       string listfile, namefile, taxfile, label, outputDir;
+       string listfile, namefile, taxfile, label, outputDir, refTaxonomy, groupfile, basis;
        bool abort, allLines, probs;
        int cutoff;
        set<string> labels; //holds labels to be used
@@ -45,7 +45,7 @@ private:
        int readTaxonomyFile();
        void removeConfidences(string&);
        int process(ListVector*);
-       string findConsensusTaxonomy(int, ListVector*, int&);   // returns the name of the "representative" taxonomy of given bin
+       vector<string> findConsensusTaxonomy(int, ListVector*, int&, string&);  // returns the name of the "representative" taxonomy of given bin
        
                                                                                                
 };