PhyloSummary* taxaSum;
if (countfile != "") {
- if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct); }
- else { taxaSum = new PhyloSummary(ct); }
+ if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, ct,false); }
+ else { taxaSum = new PhyloSummary(ct,false); }
}else {
- if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap); }
- else { taxaSum = new PhyloSummary(groupMap); }
+ if (refTaxonomy != "") { taxaSum = new PhyloSummary(refTaxonomy, groupMap,false); }
+ else { taxaSum = new PhyloSummary(groupMap,false); }
}
vector<ofstream*> outSums;
PhyloSummary* taxaSumt;
if (countfile != "") {
- if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, ct); }
- else { taxaSumt = new PhyloSummary(ct); }
+ if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, ct, false); }
+ else { taxaSumt = new PhyloSummary(ct, false); }
}else {
- if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, groupMap); }
- else { taxaSumt = new PhyloSummary(groupMap); }
+ if (refTaxonomy != "") { taxaSumt = new PhyloSummary(refTaxonomy, groupMap,false); }
+ else { taxaSumt = new PhyloSummary(groupMap,false); }
}
taxaSums.push_back(taxaSumt);
}