changing command name classify.shared to classifyrf.shared

[mothur.git] / classifyotucommand.cpp

diff --git a/classifyotucommand.cpp b/classifyotucommand.cpp
index 170c234ac245e6c32e3174ad80145fbcc359f2f2..76d7504aa04b0170629b0f022a882be94ceacfc0 100644 (file)
--- a/classifyotucommand.cpp
+++ b/classifyotucommand.cpp
@@ -616,9 +616,10 @@ int ClassifyOtuCommand::process(ListVector* processList) {
                        //add this bins taxonomy to summary
                        if (basis == "sequence") {
                                for(int j = 0; j < names.size(); j++) {  
-                    int numReps = 1;
-                    if (countfile != "") {  numReps = ct->getNumSeqs(names[j]); }
-                    for(int k = 0; k < numReps; k++) {  taxaSum->addSeqToTree(names[j], noConfidenceConTax);  }
+                    //int numReps = 1;
+                    //if (countfile != "") {  numReps = ct->getNumSeqs(names[j]); }
+                    //for(int k = 0; k < numReps; k++) {  taxaSum->addSeqToTree(names[j], noConfidenceConTax);  }
+                    taxaSum->addSeqToTree(names[j], noConfidenceConTax);
                 }
                        }else { //otu
                 map<string, bool> containsGroup;