if (namefile != "") { m->readNames(namefile, nameMap, true); }
if (groupfile != "") { groupMap = new GroupMap(groupfile); groupMap->readMap(); groups = groupMap->getNamesOfGroups(); }
else { groupMap = NULL; }
- if (countfile != "") { ct = new CountTable(); ct->readTable(countfile); if (ct->hasGroupInfo()) { groups = ct->getNamesOfGroups(); } }
+ if (countfile != "") { ct = new CountTable(); ct->readTable(countfile, true); if (ct->hasGroupInfo()) { groups = ct->getNamesOfGroups(); } }
else { ct = NULL; }
//read taxonomy file and save in map for easy access in building bin trees