sffinfo bug with flow grams right index when clipQualRight=0

[mothur.git] / classify.h

diff --git a/classify.h b/classify.h
index 6582be48d12bcaee868c3d64865a665eff073c42..7b4c1022fef35aacbc33824d99ede551e55b187c 100644 (file)
--- a/classify.h
+++ b/classify.h
@@ -17,10 +17,8 @@
 #include "database.hpp"
 #include "phylotree.h"
 
-
 class Sequence;
 
-
 /**************************************************************************************************/
 
 class Classify {
@@ -37,7 +35,6 @@ public:
 protected:
 
        map<string, string> taxonomy;  //name maps to taxonomy
-       //map<string, int> genusCount;  //maps genus to count - in essence a list of how many seqs are in each taxonomy
        map<string, int>::iterator itTax;
        map<string, string>::iterator it;
        Database* database;
@@ -45,11 +42,12 @@ protected:
        
        string taxFile, templateFile, simpleTax;
        vector<string> names;
-       int threadID;
+       int threadID, numLevels, numTaxa;
        bool flip, flipped, shortcuts;
        
        int readTaxonomy(string);
        vector<string> parseTax(string);
+    double getLogExpSum(vector<double>, int&);
        MothurOut* m;
        
 };