*** empty log message ***

[mothur.git] / classify.cpp

diff --git a/classify.cpp b/classify.cpp
index 25aa2dd7b9f2f8a4f36030eebf0d3284f7d28b08..c92d9fdc6526788df19d9e6f487ffb641bbaca44 100644 (file)
--- a/classify.cpp
+++ b/classify.cpp
@@ -61,7 +61,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                        names.push_back(temp.getName());
                                        database->addSequence(temp);    
                                }
-                               database->generateDB();
+//                             database->generateDB();
                        }else if ((method == "kmer") && (!needToGenerate)) {    
                                ifstream kmerFileTest(kmerDBName.c_str());
                                database->readKmerDB(kmerFileTest);     
@@ -150,7 +150,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                        }
                                }
                                
-                               database->generateDB();
+//                             database->generateDB();
                                MPI_File_close(&inMPI);
                                MPI_Barrier(MPI_COMM_WORLD); //make everyone wait - just in case
                #else
@@ -200,7 +200,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                }
                                fastaFile.close();
 
-                               database->generateDB();
+//                             database->generateDB();
                                
                        }else if ((method == "kmer") && (!needToGenerate)) {    
                                ifstream kmerFileTest(kmerDBName.c_str());
@@ -223,9 +223,9 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                        database->setNumSeqs(names.size());
                        
                        //sanity check
-                       bool okay = phyloTree->ErrorCheck(names);
+                       //bool okay = phyloTree->ErrorCheck(names);
                        
-                       if (!okay) { m->control_pressed = true; }
+                       //if (!okay) { m->control_pressed = true; }
                        
                        m->mothurOut("DONE."); m->mothurOutEndLine();
                        m->mothurOut("It took " + toString(time(NULL) - start) + " seconds generate search database. "); m->mothurOutEndLine();