changes to chop.seqs

[mothur.git] / classify.cpp

diff --git a/classify.cpp b/classify.cpp
index e07344d4678a0ca263008e4b10d4d125ad8ef122..7f451261550a949b3a1cbb7ab72fd374122597bb 100644 (file)
--- a/classify.cpp
+++ b/classify.cpp
@@ -128,7 +128,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                gobble(fastaFile);
                        
                                names.push_back(temp.getName());
-                                                               
+                                                       
                                database->addSequence(temp);    
                        }
                        fastaFile.close();
@@ -153,6 +153,11 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
 #endif         
                database->setNumSeqs(names.size());
                
+               //sanity check
+               bool okay = phyloTree->ErrorCheck(names);
+               
+               if (!okay) { m->control_pressed = true; }
+               
                m->mothurOut("DONE."); m->mothurOutEndLine();
                m->mothurOut("It took " + toString(time(NULL) - start) + " seconds generate search database. "); m->mothurOutEndLine();