added otulabels to heatmap.bin. made OTUlabels “smarter” so OTU01 and OTU001 are...

[mothur.git] / classify.cpp

diff --git a/classify.cpp b/classify.cpp
index 5f97c7ec693a97997554683188a013b1054eb3d7..71a9b258e91bf2f527e2e1a8469f2e1e8037d76d 100644 (file)
--- a/classify.cpp
+++ b/classify.cpp
@@ -295,12 +295,13 @@ int Classify::readTaxonomy(string file) {
                        iss >> name; m->gobble(iss);
             iss >> taxInfo;
             if (m->debug) { m->mothurOut("[DEBUG]: name = " + name + " tax = " + taxInfo + "\n"); }
-                       if (m->inUsersGroups(name, names)) {
+            //commented out to save time with large templates. 10/7/13
+                       //if (m->inUsersGroups(name, names)) {
                 taxonomy[name] = taxInfo;
                 phyloTree->addSeqToTree(name, taxInfo);
-            }else {
-                m->mothurOut("[WARNING]: " + name + " is in your taxonomy file and not in your reference file, ignoring.\n");
-            }          
+            //}else {
+            //    m->mothurOut("[WARNING]: " + name + " is in your taxonomy file and not in your reference file, ignoring.\n");
+            //}
         }
                
                MPI_File_close(&inMPI);