added distance search method to classify.seqs

[mothur.git] / classify.cpp

diff --git a/classify.cpp b/classify.cpp
index c0f8a9c7d5115c60d46626235e82b99b625c43c1..346c76478eefdf896fe6f04659174321bc721063 100644 (file)
--- a/classify.cpp
+++ b/classify.cpp
@@ -12,6 +12,7 @@
 #include "kmerdb.hpp"
 #include "suffixdb.hpp"
 #include "blastdb.hpp"
+#include "distancedb.hpp"
 
 /**************************************************************************************************/
 Classify::Classify(string tfile, string tempFile, string method, int kmerSize, float gapOpen, float gapExtend, float match, float misMatch) : taxFile(tfile), templateFile(tempFile) {         
@@ -42,6 +43,7 @@ Classify::Classify(string tfile, string tempFile, string method, int kmerSize, f
                }
                else if(method == "suffix")             {       database = new SuffixDB(numSeqs);                                                               }
                else if(method == "blast")              {       database = new BlastDB(gapOpen, gapExtend, match, misMatch);    }
+               else if(method == "distance")   {       database = new DistanceDB();    }
                else {
                        mothurOut(method + " is not a valid search option. I will run the command using kmer, ksize=8.");
                        mothurOutEndLine();