changed how we count sequences in a fastafile to allow for '>' in sequence names

[mothur.git] / classify.cpp

diff --git a/classify.cpp b/classify.cpp
index 7f451261550a949b3a1cbb7ab72fd374122597bb..22728eb7a3ee52a57926e5457a33d73c9a1d7d07 100644 (file)
--- a/classify.cpp
+++ b/classify.cpp
@@ -97,7 +97,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                if (method == "suffix") {
                        ifstream inFASTA;
                        openInputFile(tempFile, inFASTA);
-                       numSeqs = count(istreambuf_iterator<char>(inFASTA),istreambuf_iterator<char>(), '>');
+                       getNumSeqs(inFASTA, numSeqs);
                        inFASTA.close();
                }