added blastlocation to chimera.slayer and fixed issue with clearcut getting current...

[mothur.git] / classify.cpp

diff --git a/classify.cpp b/classify.cpp
index 7770999e779917996a916e87836a03c3a2a8f26b..1642f0bb037f609971797812575aa109e35aed28 100644 (file)
--- a/classify.cpp
+++ b/classify.cpp
@@ -47,7 +47,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                }
                        }
                        else if(method == "suffix")             {       database = new SuffixDB(numSeqs);                                                               }
-                       else if(method == "blast")              {       database = new BlastDB(tempFile.substr(0,tempFile.find_last_of(".")+1), gapOpen, gapExtend, match, misMatch);   }
+                       else if(method == "blast")              {       database = new BlastDB(tempFile.substr(0,tempFile.find_last_of(".")+1), gapOpen, gapExtend, match, misMatch, "");       }
                        else if(method == "distance")   {       database = new DistanceDB();    }
                        else {
                                m->mothurOut(method + " is not a valid search option. I will run the command using kmer, ksize=8.");
@@ -176,7 +176,7 @@ void Classify::generateDatabaseAndNames(string tfile, string tempFile, string me
                                }
                        }
                        else if(method == "suffix")             {       database = new SuffixDB(numSeqs);                                                               }
-                       else if(method == "blast")              {       database = new BlastDB(tempFile.substr(0,tempFile.find_last_of(".")+1), gapOpen, gapExtend, match, misMatch);   }
+                       else if(method == "blast")              {       database = new BlastDB(tempFile.substr(0,tempFile.find_last_of(".")+1), gapOpen, gapExtend, match, misMatch, "");       }
                        else if(method == "distance")   {       database = new DistanceDB();    }
                        else {
                                m->mothurOut(method + " is not a valid search option. I will run the command using kmer, ksize=8.");