added pairwise.seqs

[mothur.git] / chopseqscommand.h

diff --git a/chopseqscommand.h b/chopseqscommand.h
index 8e007ff7513e62df1dd32e7fe192628c02e48425..dbf4d23b71ebc1302672e66bc65472331117713f 100644 (file)
--- a/chopseqscommand.h
+++ b/chopseqscommand.h
@@ -30,7 +30,7 @@ class ChopSeqsCommand : public Command {
                
        private:
                string fastafile, outputDir, keep;
-               bool abort, countGaps;
+               bool abort, countGaps, Short;
                int numbases;
                vector<string> outputNames;
                map<string, vector<string> > outputTypes;