string outFasta, outAccnos, keep;
unsigned long long start;
unsigned long long end;
- int numbases;
+ int numbases, count;
bool countGaps, Short, wroteAccnos;
MothurOut* m;
string namefile;
bool done = false;
bool wroteAccnos = false;
- int count = 0;
+ pDataArray->count = 0;
for(int i = 0; i < pDataArray->end; i++){ //end is the number of sequences to process
outAcc << seq.getName() << endl;
pDataArray->wroteAccnos = true;
}
- count++;
+ pDataArray->count++;
}
//report progress
- if((count) % 1000 == 0){ pDataArray->m->mothurOut(toString(count)); pDataArray->m->mothurOutEndLine(); }
+ if((pDataArray->count) % 1000 == 0){ pDataArray->m->mothurOut(toString(pDataArray->count)); pDataArray->m->mothurOutEndLine(); }
}
//report progress
- if((count) % 1000 != 0){ pDataArray->m->mothurOut(toString(count)); pDataArray->m->mothurOutEndLine(); }
+ if((pDataArray->count) % 1000 != 0){ pDataArray->m->mothurOut(toString(pDataArray->count)); pDataArray->m->mothurOutEndLine(); }
in.close();