added countgaps parameter to chop.seqs command

[mothur.git] / chopseqscommand.h

diff --git a/chopseqscommand.h b/chopseqscommand.h
index b6af15466c3f7fde3062760335c12e11025e7393..604906425997010d3cfcde2b41b9cdeb6b5a1ae7 100644 (file)
--- a/chopseqscommand.h
+++ b/chopseqscommand.h
@@ -25,7 +25,7 @@ class ChopSeqsCommand : public Command {
                
        private:
                string fastafile, outputDir, keep;
-               bool abort;
+               bool abort, countGaps;
                int numbases;
                
                string getChopped(Sequence);