added chop.seqs command

[mothur.git] / chopseqscommand.h

diff --git a/chopseqscommand.h b/chopseqscommand.h
new file mode 100644 (file)
index 0000000..5d8d6c4
--- /dev/null
+++ b/chopseqscommand.h
@@ -0,0 +1,33 @@
+#ifndef CHOPSEQSCOMMAND_H
+#define CHOPSEQSCOMMAND_H
+
+/*
+ *  chopseqscommand.h
+ *  Mothur
+ *
+ *  Created by westcott on 5/10/10.
+ *  Copyright 2010 Schloss Lab. All rights reserved.
+ *
+ */
+
+
+#include "command.hpp"
+
+class ChopSeqsCommand : public Command {
+       
+       public:
+       
+               ChopSeqsCommand(string);        
+               ~ChopSeqsCommand(){};
+               int execute();
+               void help();    
+               
+       private:
+               string fastafile, outputDir;
+               bool abort;
+               int end;
+};
+
+#endif
+
+