moved mothur's source into a folder to make grabbing just the source easier on github

[mothur.git] / chopseqscommand.h

diff --git a/chopseqscommand.h b/chopseqscommand.h
deleted file mode 100644 (file)
index e73714d..0000000
--- a/chopseqscommand.h
+++ /dev/null
@@ -1,46 +0,0 @@
-#ifndef CHOPSEQSCOMMAND_H
-#define CHOPSEQSCOMMAND_H
-
-/*
- *  chopseqscommand.h
- *  Mothur
- *
- *  Created by westcott on 5/10/10.
- *  Copyright 2010 Schloss Lab. All rights reserved.
- *
- */
-
-
-#include "command.hpp"
-#include "sequence.hpp"
-
-class ChopSeqsCommand : public Command {
-       
-       public:
-       
-               ChopSeqsCommand(string);
-               ChopSeqsCommand();      
-               ~ChopSeqsCommand(){};
-       
-               vector<string> setParameters();
-               string getCommandName()                 { return "chop.seqs";           }
-               string getCommandCategory()             { return "Sequence Processing"; }
-               string getHelpString(); 
-               string getCitation() { return "http://www.mothur.org/wiki/Chops.seqs"; }
-               string getDescription()         { return "trim sequence length"; }
-       
-               int execute(); 
-               void help() { m->mothurOut(getHelpString()); }          
-       
-       private:
-               string fastafile, outputDir, keep;
-               bool abort, countGaps, Short;
-               int numbases;
-               vector<string> outputNames;
-               
-               string getChopped(Sequence);
-};
-
-#endif
-
-