fixes while testing

[mothur.git] / chopseqscommand.cpp

diff --git a/chopseqscommand.cpp b/chopseqscommand.cpp
index 1133ff46a8620817708c72607141691d59d5c4ac..31fe64f232919ec714eecb3227e2ee946d0c9c12 100644 (file)
--- a/chopseqscommand.cpp
+++ b/chopseqscommand.cpp
@@ -25,6 +25,7 @@ vector<string> ChopSeqsCommand::getValidParameters(){
 //**********************************************************************************************************************
 ChopSeqsCommand::ChopSeqsCommand(){    
        try {
+               abort = true;
                //initialize outputTypes
                vector<string> tempOutNames;
                outputTypes["fasta"] = tempOutNames;