added mothurgetpid function. fixed bug with align.seqs related to g++ 4.8 change...

[mothur.git] / chopseqscommand.cpp

diff --git a/chopseqscommand.cpp b/chopseqscommand.cpp
index 96d7ae641b8b956694fe5ad12b9671c0279b302c..8c82992854d06d9a559ecd2cf32149ffbaef5b3c 100644 (file)
--- a/chopseqscommand.cpp
+++ b/chopseqscommand.cpp
@@ -378,11 +378,11 @@ bool ChopSeqsCommand::createProcesses(vector<linePair> lines, string filename, s
                                processIDS.push_back(pid);  //create map from line number to pid so you can append files in correct order later
                                process++;
                        }else if (pid == 0){
-                               wroteAccnos = driver(lines[process], filename, outFasta + toString(getpid()) + ".temp", outAccnos + toString(getpid()) + ".temp");
+                               wroteAccnos = driver(lines[process], filename, outFasta + m->mothurGetpid(process) + ".temp", outAccnos + m->mothurGetpid(process) + ".temp");
                                
                                //pass numSeqs to parent
                                ofstream out;
-                               string tempFile = fastafile + toString(getpid()) + ".bool.temp";
+                               string tempFile = fastafile + m->mothurGetpid(process) + ".bool.temp";
                                m->openOutputFile(tempFile, out);
                                out << wroteAccnos << endl;                             
                                out.close();