fixed bug with trim.seqs allfiles=t

[mothur.git] / chimerauchimecommand.cpp

diff --git a/chimerauchimecommand.cpp b/chimerauchimecommand.cpp
index 5deeff755de28c54b6f06ed2caa84482788c7d1a..d4cb57a3158a85008d30d9c875e331f5be5801e9 100644 (file)
--- a/chimerauchimecommand.cpp
+++ b/chimerauchimecommand.cpp
@@ -715,7 +715,7 @@ int ChimeraUchimeCommand::driver(string outputFName, string filename, string acc
                        in >> chimeraFlag >> name;
                        
                        //fix name if needed
-                       if (templatefile != "self") { 
+                       if (templatefile == "self") { 
                                name = name.substr(0, name.length()-1); //rip off last /
                                name = name.substr(0, name.find_last_of('/'));
                        }