added dereplicate parameter to chimera.slayer and chimera.persues. added minnumsample...

[mothur.git] / chimerauchimecommand.cpp

diff --git a/chimerauchimecommand.cpp b/chimerauchimecommand.cpp
index 04e1f1ddf244057e462d51c39c2913900d6424c3..ce7ce456d87c5c8c6e5a137cd661b02710e0977c 100644 (file)
--- a/chimerauchimecommand.cpp
+++ b/chimerauchimecommand.cpp
@@ -556,11 +556,11 @@ ChimeraUchimeCommand::ChimeraUchimeCommand(string option)  {
                        temp = validParameter.validFile(parameters, "skipgaps2", false);                                if (temp == "not found") { temp = "t"; }
                        skipgaps2 = m->isTrue(temp); 
             
-            string usedDups = "false";
+            
                        temp = validParameter.validFile(parameters, "dereplicate", false);      
                        if (temp == "not found") { 
                                if (groupfile != "")    {  temp = "false";                                      }
-                               else                    {  temp = "true"; usedDups = "";        }
+                               else                    {  temp = "true";       }
                        }
                        dups = m->isTrue(temp);