added processors to pre.cluster for mac and windows. Fixed bug in reNameFile function...

[mothur.git] / chimerauchimecommand.cpp

diff --git a/chimerauchimecommand.cpp b/chimerauchimecommand.cpp
index 2b24fd8ed7ccc3fba78fa08d25c6c77a67506229..caddc27d9853299e8777998db09da3d148abba62 100644 (file)
--- a/chimerauchimecommand.cpp
+++ b/chimerauchimecommand.cpp
@@ -1344,7 +1344,7 @@ int ChimeraUchimeCommand::createProcesses(string outputFileName, string filename
                
                
                //append output files
-               for(int i=0;i<processIDS[i];i++){
+               for(int i=0;i<processIDS.size();i++){
                        m->appendFiles((outputFileName + toString(processIDS[i]) + ".temp"), outputFileName);
                        m->mothurRemove((outputFileName + toString(processIDS[i]) + ".temp"));
                        
@@ -1436,7 +1436,7 @@ int ChimeraUchimeCommand::createProcessesGroups(SequenceParser& parser, string o
                
                
                //append output files
-               for(int i=0;i<processIDS[i];i++){
+               for(int i=0;i<processIDS.size();i++){
                        m->appendFiles((outputFName + toString(processIDS[i]) + ".temp"), outputFName);
                        m->mothurRemove((outputFName + toString(processIDS[i]) + ".temp"));