added chimera.uchime

[mothur.git] / chimerauchimecommand.cpp

diff --git a/chimerauchimecommand.cpp b/chimerauchimecommand.cpp
index 58e678198acc83e980942317984361b46f6194e0..abd699eff98156435de11ad2f3cf891b09ffa76e 100644 (file)
--- a/chimerauchimecommand.cpp
+++ b/chimerauchimecommand.cpp
@@ -605,6 +605,9 @@ int ChimeraUchimeCommand::createProcesses(string outputFileName, string filename
                        remove((accnos + toString(processIDS[i]) + ".temp").c_str());
                }
 #endif         
+               //get rid of the file pieces.
+               for (int i = 0; i < files.size(); i++) { remove(files[i].c_str()); }
+               
                return num;     
        }
        catch(exception& e) {