added mothurOutJustToScreen function and changed all counter outputs to use it.

[mothur.git] / chimeraslayercommand.h

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 68e03b8f881930fd919fc36b2283cc4024d3a2b0..e8afc61a5b32e5379d8c02a47a9a965eb3d1606d 100644 (file)
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -327,10 +327,10 @@ static DWORD WINAPI MySlayerThreadFunction(LPVOID lpParam){
                        
                        delete candidateSeq;
                        //report progress
-                       if((pDataArray->count) % 100 == 0){     pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine();             }
+                       if((pDataArray->count) % 100 == 0){     pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count) +"\n");      }
                }
                //report progress
-               if((pDataArray->count) % 100 != 0){     pDataArray->m->mothurOut("Processing sequence: " + toString(pDataArray->count)); pDataArray->m->mothurOutEndLine();             }
+               if((pDataArray->count) % 100 != 0){     pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(pDataArray->count)+"\n");               }
                
                pDataArray->numNoParents = chimera->getNumNoParents();
                if (pDataArray->numNoParents == pDataArray->count) {    pDataArray->m->mothurOut("[WARNING]: megablast returned 0 potential parents for all your sequences. This could be due to formatdb.exe not being setup properly, please check formatdb.log for errors.\n"); }
@@ -506,10 +506,10 @@ static DWORD WINAPI MySlayerGroupThreadFunction(LPVOID lpParam){
                                if (inFASTA.eof()) { break; }
                                
                                //report progress
-                               if((numSeqs) % 100 == 0){       pDataArray->m->mothurOut("Processing sequence: " + toString(numSeqs)); pDataArray->m->mothurOutEndLine();               }
+                               if((numSeqs) % 100 == 0){       pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs)+"\n"); pDataArray->m->mothurOutEndLine();              }
                        }
                        //report progress
-                       if((numSeqs) % 100 != 0){       pDataArray->m->mothurOut("Processing sequence: " + toString(numSeqs)); pDataArray->m->mothurOutEndLine();               }
+                       if((numSeqs) % 100 != 0){       pDataArray->m->mothurOutJustToScreen("Processing sequence: " + toString(numSeqs)+"\n");                 }
                        
                        pDataArray->numNoParents = chimera->getNumNoParents();
                        if (pDataArray->numNoParents == numSeqs) {      pDataArray->m->mothurOut("[WARNING]: megablast returned 0 potential parents for all your sequences. This could be due to formatdb.exe not being setup properly, please check formatdb.log for errors.\n"); }