finished chimera.slayer template=self change

[mothur.git] / chimeraslayercommand.h

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 6ca0310d109c117cf5205ac0725e79338540676a..e5ffeb69c860aab7d08e60d134d6baacae4033f4 100644 (file)
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -44,7 +44,7 @@ private:
        int driver(linePair*, string, string, string, string);
        int createProcesses(string, string, string, string);
        int divideInHalf(Sequence, string&, string&);
-       string sortFastaFile(string, string);
+       map<string, int> sortFastaFile(string, string);
                
        #ifdef USE_MPI
        int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long int>&);