added save parameter to align.seqs, chimera commands, classify.seqs, and seq.error...

[mothur.git] / chimeraslayercommand.h

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 35ff7627552d2e2d15fe4e03adcd9c634e8b8b3c..cfa934abf6655e9605d104300b90e0d590ce179f 100644 (file)
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -52,7 +52,7 @@ private:
        int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long int>&);
        #endif
 
-       bool abort, realign, trim, trimera;
+       bool abort, realign, trim, trimera, save;
        string fastafile, templatefile, outputDir, search, namefile;
        int processors, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity, minCoverage, minBS, minSNP, numSeqs, templateSeqsLength;
        float divR;