added dereplicate parameter to chimera.slayer and chimera.persues. added minnumsample...

[mothur.git] / chimeraslayercommand.h

diff --git a/chimeraslayercommand.h b/chimeraslayercommand.h
index 6149ef5b7ded364733fa4480dc9386d2e7e92fb2..0c6ebe2de76c957f2a3f9c072b9127efb002e5fb 100644 (file)
--- a/chimeraslayercommand.h
+++ b/chimeraslayercommand.h
@@ -70,7 +70,7 @@ private:
        int driverMPI(int, int, MPI_File&, MPI_File&, MPI_File&, MPI_File&, vector<unsigned long long>&, string, map<string, int>&, bool);
        #endif
 
-       bool abort, realign, trim, trimera, save, hasName, hasCount;
+       bool abort, realign, trim, trimera, save, hasName, hasCount, dups;
        string fastafile, groupfile, templatefile, outputDir, search, namefile, countfile, blastlocation;
        int processors, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity, minCoverage, minBS, minSNP, numSeqs, templateSeqsLength;
        float divR;