added checks to make sure windows processes completed their tasks.

[mothur.git] / chimeraslayercommand.cpp

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 576fee94250f780685bbc57cd20bf0478241f74e..a1be2359c1516aa26395a2ba00c6101fb3a996f3 100644 (file)
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -1497,6 +1497,9 @@ int ChimeraSlayerCommand::createProcessesGroups(string outputFName, string accno
                
                //Close all thread handles and free memory allocations.
                for(int i=0; i < pDataArray.size(); i++){
+            if (pDataArray[i]->count != pDataArray[i]->end) {
+                m->mothurOut("[ERROR]: process " + toString(i) + " only processed " + toString(pDataArray[i]->count) + " of " + toString(pDataArray[i]->end) + " sequences assigned to it, quitting. \n"); m->control_pressed = true; 
+            }
                        num += pDataArray[i]->count;
                        CloseHandle(hThreadArray[i]);
                        delete pDataArray[i];