a few modifications for 1.9

[mothur.git] / chimeraslayercommand.cpp

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 4b309c0124a2038cb49db3980345e10e535ce84d..8bb8c2c5e53a860939e092f23ebb5853e5186b44 100644 (file)
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -217,22 +217,31 @@ int ChimeraSlayerCommand::execute(){
                        int outMode=MPI_MODE_CREATE|MPI_MODE_WRONLY; 
                        int inMode=MPI_MODE_RDONLY; 
                        
-                       char* outFilename = new char[outputFileName.length()];
-                       memcpy(outFilename, outputFileName.c_str(), outputFileName.length());
+                       //char* outFilename = new char[outputFileName.length()];
+                       //memcpy(outFilename, outputFileName.c_str(), outputFileName.length());
                        
-                       char* outAccnosFilename = new char[accnosFileName.length()];
-                       memcpy(outAccnosFilename, accnosFileName.c_str(), accnosFileName.length());
+                       char outFilename[1024];
+                       strcpy(outFilename, outputFileName.c_str());
+                       
+                       //char* outAccnosFilename = new char[accnosFileName.length()];
+                       //memcpy(outAccnosFilename, accnosFileName.c_str(), accnosFileName.length());
+                       
+                       char outAccnosFilename[1024];
+                       strcpy(outAccnosFilename, accnosFileName.c_str());
 
-                       char* inFileName = new char[fastafile.length()];
-                       memcpy(inFileName, fastafile.c_str(), fastafile.length());
+                       //char* inFileName = new char[fastafile.length()];
+                       //memcpy(inFileName, fastafile.c_str(), fastafile.length());
+                       
+                       char inFileName[1024];
+                       strcpy(inFileName, fastafile.c_str());
 
                        MPI_File_open(MPI_COMM_WORLD, inFileName, inMode, MPI_INFO_NULL, &inMPI);  //comm, filename, mode, info, filepointer
                        MPI_File_open(MPI_COMM_WORLD, outFilename, outMode, MPI_INFO_NULL, &outMPI);
                        MPI_File_open(MPI_COMM_WORLD, outAccnosFilename, outMode, MPI_INFO_NULL, &outMPIAccnos);
                        
-                       delete inFileName;
-                       delete outFilename;
-                       delete outAccnosFilename;
+                       //delete inFileName;
+                       //delete outFilename;
+                       //delete outAccnosFilename;
 
                        if (m->control_pressed) {  MPI_File_close(&inMPI);  MPI_File_close(&outMPI);   MPI_File_close(&outMPIAccnos);  delete chimera; return 0;  }