some changes while testing 1.9

[mothur.git] / chimeraslayercommand.cpp

diff --git a/chimeraslayercommand.cpp b/chimeraslayercommand.cpp
index 336dba939f1fd114c6ace70f1ddc2501448df336..1a5ae09df87ee9e37abbf81621b0da532a4549dd 100644 (file)
--- a/chimeraslayercommand.cpp
+++ b/chimeraslayercommand.cpp
@@ -405,7 +405,7 @@ int ChimeraSlayerCommand::execute(){
 
                #else
                        ifstream inFASTA;
-                       openInputFile(candidateFileNames[s], inFASTA);
+                       openInputFile(fastafile, inFASTA);
                        numSeqs=count(istreambuf_iterator<char>(inFASTA),istreambuf_iterator<char>(), '>');
                        inFASTA.close();
                        lines.push_back(new linePair(0, numSeqs));