removed parse.sff command and made its functionality part of sffinfo command. fixed...

[mothur.git] / chimeraslayer.h

diff --git a/chimeraslayer.h b/chimeraslayer.h
index b6cae49f0709922ac9067ef1d39effab77d3d5be..fbe880fde4ed0723dff1e3ec8e982942360e993a 100644 (file)
--- a/chimeraslayer.h
+++ b/chimeraslayer.h
@@ -26,7 +26,7 @@ class ChimeraSlayer : public Chimera {
        
        public:
                ChimeraSlayer(string, string, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool);
-               ChimeraSlayer(string, string, string, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool);
+               ChimeraSlayer(string, string, string, string, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool);
 
                ~ChimeraSlayer();
                
@@ -48,7 +48,7 @@ class ChimeraSlayer : public Chimera {
                map<string, vector<string> > nameMapRank;  //sequence name to rank so you can construct a template of the abundant sequences if the user uses itself as template
                
                vector<data_struct>  chimeraResults;
-               string chimeraFlags, searchMethod, fastafile;
+               string chimeraFlags, searchMethod, fastafile, includeAbunds;
                bool realign;
                int window, numWanted, kmerSize, match, misMatch, minSim, minCov, minBS, minSNP, parents, iters, increment;
                float divR;