chimeras

[mothur.git] / chimeraslayer.h

diff --git a/chimeraslayer.h b/chimeraslayer.h
index 4095b86a4b0855e31b05bbfd775504801cc4ed1f..f8006c41382919b311e8fd8b590f31e9b8bfaad1 100644 (file)
--- a/chimeraslayer.h
+++ b/chimeraslayer.h
@@ -23,7 +23,7 @@
 class ChimeraSlayer : public Chimera {
        
        public:
-               ChimeraSlayer(string);  
+               ChimeraSlayer(string, bool);    
                ~ChimeraSlayer();
                
                int getChimeras(Sequence*);
@@ -40,6 +40,7 @@ class ChimeraSlayer : public Chimera {
                vector<data_struct>  chimeraResults;
                string chimeraFlags, searchMethod;
                string fastafile;
+               bool realign;
        
                void printBlock(data_struct, ostream&);
 };