added blastlocation to chimera.slayer and fixed issue with clearcut getting current...

[mothur.git] / chimeraslayer.h

diff --git a/chimeraslayer.h b/chimeraslayer.h
index 8c3cbb22994cb4956f5752806a76bf5b9b1361df..ef7b3c3c4fb46efa313aa9b03b7fcbc84489c497 100644 (file)
--- a/chimeraslayer.h
+++ b/chimeraslayer.h
@@ -24,8 +24,8 @@
 class ChimeraSlayer : public Chimera {
        
        public:
-               ChimeraSlayer(string, string, bool, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool);
-               ChimeraSlayer(string, string, bool, map<string, int>&, string,  int, int, int, int, float, int, int, int, int, int, int, int, int, bool);
+               ChimeraSlayer(string, string, bool, string, int, int, int, int, float, int, int, int, int, int, int, int, int, bool, string);
+               ChimeraSlayer(string, string, bool, map<string, int>&, string,  int, int, int, int, float, int, int, int, int, int, int, int, int, bool, string);
 
                ~ChimeraSlayer();
                
@@ -54,7 +54,7 @@ class ChimeraSlayer : public Chimera {
        
                vector<data_struct>  chimeraResults;
                data_results printResults;
-               string chimeraFlags, searchMethod, fastafile;
+               string chimeraFlags, searchMethod, fastafile, blastlocation;
                bool realign, trimChimera;
                int window, numWanted, kmerSize, match, misMatch, minSim, minCov, minBS, minSNP, parents, iters, increment;
                float divR;