- vector<Sequence*> getTemplate(Sequence*, vector<Sequence*>&);
- vector<Sequence*> getRefSeqs(Sequence*, vector<Sequence*>&, vector<Sequence*>&);
- vector<Sequence*> getBlastSeqs(Sequence*, vector<Sequence*>&, int);
- vector<Sequence*> getKmerSeqs(Sequence*, vector<Sequence*>&, int);
+ vector<Sequence*> getTemplate(Sequence, vector<Sequence*>&);
+ vector<Sequence> getRefSeqs(Sequence, vector<Sequence*>&, vector<Sequence*>&);
+ vector<Sequence> getBlastSeqs(Sequence, vector<Sequence*>&, int);
+ vector<Sequence> getKmerSeqs(Sequence, vector<Sequence*>&, int);