sped up realign

[mothur.git] / chimeraslayer.cpp

diff --git a/chimeraslayer.cpp b/chimeraslayer.cpp
index 5868a7c721e69a9206a668536f35d02d573c9568..e62c2f047417f29658673493595a5ee1f01e8d29 100644 (file)
--- a/chimeraslayer.cpp
+++ b/chimeraslayer.cpp
@@ -765,7 +765,7 @@ int ChimeraSlayer::getChimeras(Sequence* query) {
                if (chimeraFlag == "yes") {
                
                        if (realign) {
-                               ChimeraReAligner realigner(thisTemplate, match, misMatch);
+                               ChimeraReAligner realigner;
                                realigner.reAlign(query, Results);
                        }