working on chimeraslayer and found bug in shared command.

[mothur.git] / chimeraseqscommand.h

diff --git a/chimeraseqscommand.h b/chimeraseqscommand.h
index 6274c48ea2acd8849155e9fc3b8813f6bae74919..f19a79d230642894a8bbb7ab9d459f43368fd5dd 100644 (file)
--- a/chimeraseqscommand.h
+++ b/chimeraseqscommand.h
@@ -28,9 +28,10 @@ public:
 private:
        
        bool abort;
-       string method, fastafile, templatefile, consfile, quanfile, maskfile;
-       bool filter, correction;
-       int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted;
+       string method, fastafile, templatefile, consfile, quanfile, maskfile, namefile;
+       bool filter, correction, svg, printAll;
+       int processors, midpoint, averageLeft, averageRight, window, iters, increment, numwanted, ksize, match, mismatch, parents, minSimilarity;
+       float divR;
        Chimera* chimera;