fixed some bugs found while testing 1.8

[mothur.git] / chimeraseqscommand.cpp

diff --git a/chimeraseqscommand.cpp b/chimeraseqscommand.cpp
index 63d02f5fd6998e61b65c85012d37d8061f6ff433..49414883224bb940b761ee4d1a47ae481982973d 100644 (file)
--- a/chimeraseqscommand.cpp
+++ b/chimeraseqscommand.cpp
@@ -254,7 +254,7 @@ int ChimeraSeqsCommand::execute(){
                
                if (method == "bellerophon")                    {               chimera = new Bellerophon(fastafile, outputDir);                        }
                else if (method == "pintail")                   {               chimera = new Pintail(fastafile, templatefile, outputDir);      }
-               else if (method == "ccode")                             {               chimera = new Ccode(fastafile, templatefile);                           }
+               else if (method == "ccode")                             {               chimera = new Ccode(fastafile, templatefile, outputDir);                        }
                else if (method == "chimeracheck")              {               chimera = new ChimeraCheckRDP(fastafile, templatefile, outputDir);      }
                else if (method == "chimeraslayer")             {               chimera = new ChimeraSlayer(fastafile, templatefile);           }
                else { mothurOut("Not a valid method."); mothurOutEndLine(); return 0;          }